Pubmed Parser

€30-250 EUR

Completed

Posted

over 5 years ago

€30-250 EUR

Paid on delivery

There are several tools out there, but none meeting quite the requirements. I need a scripting tool to extract information from Pubmed Queries (XML). The tool should be written in Python or if need be in PERL. It should be able to handle data with more than 100.000 entries. The required result is a csv-table or txt-table with the following fields: Article key (int) Journal (string) Year of Publication (string: YYYY-MM-DD) Number of authors (int) Author last name (string) Author first name (string) Author affiliation (string) Author email (string) Position of Author in List (int) First Author position (boolean) Last Author position (boolean) The article key is a variable which is unique to the article. DOI or PID may be used for this. The table has to be sorted by author and article. That means that every combination of author and article key is unique within the table! For every article of the list, the table gets an entry for every author with additional data. The script has to be fault tolerant to entries with no available entries. The estimated complete data entries is around 20%.

Perl

Python

XML

Project ID: 18447437

About the project

12 proposals

Remote project

Active 5 yrs ago

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Awarded to:

@devops724

hi there I have 10 years experience in Python and web development. I did lots of projects in web world, develop in most web technologies. 8 years developing Django sites and services. I did lots of projects in scrapy and crawler. because i am new in freelancer.com i offer/accept lower price to get more rank. technology that i can code in: Python, ,PHP, Django, WordPress, Scrapy, NodeJS Drupal, JQuery, Backbone.js, [login to view URL], Android Native , [login to view URL], Databases: MySQL, MongoDB, PostreSQL, OS: Linux server distros best regards

€300 EUR in 14 days

4.9

(83 reviews)

7.1

12 freelancers are bidding on average €224 EUR for this job

@lkhelladi

Hello, I'd be glad to develop the pubmed scrapper for you using python. Looking forward to chat with you soon for more details. Best regards,

€258 EUR in 3 days

5.0

(183 reviews)

7.6

@gangabass

I can provide you Python script that will execute Pubmed query, parse XML and save it as CSV output. I can complete it in less than two days for just €200. All I need to start is a sample query you want to execute.

€200 EUR in 2 days

4.9

(559 reviews)

7.8

@freelance4hire80

Hi, I'm interested to develop a Perl parser for you. can you please send some sample Pubmed XML query Thanks

€222 EUR in 3 days

5.0

(55 reviews)

6.7

@Mickelson

Hi Nice to meet you. I'm python expert and my last project on freelancer.com is also python scraping task. My past works: Youtube comment scrapping Real estate property list to csv Job-site content to csv And scrap posts from facebook, twitter, instagram using scrapy. I think parse xml using python and generate report for that is so easy. I can help you related with python. Let me know if you are interested in me. Regards.

€150 EUR in 3 days

4.9

(68 reviews)

6.4

@kunitsynartem

Hello! I'm ready to make your project with Python +Scrapy framework. This is the most suitable solution for your requirements. Scrapy allows to handle large amounts of data, it easily stores data to csv, etc. Would you be so kind to provide me with a sample xml or website url so I could make a sample output file for you... Looking forward for our mutual benefit cooperation with you!) Thanks for your attention.

€200 EUR in 5 days

5.0

(26 reviews)

5.8

@DebasisB

Hi there, I am interested in the project. I can develop the solution in Python, and it can easily handle the data volume you have mentioned without any problem.

€222 EUR in 3 days

4.9

(22 reviews)

5.5

@rabhardwaj

I have been in this field for more than 7 years. i have experience in C#,php,Perl,wordpress,Html,postgress ,Ubuntu,Crontab,Web Services, Rest Api, Zend ,YIi,Mysql. Relevant Skills and Experience so i am right candidate for your project because i have experience in C#,Perl,php,node.js,Ubuntu,Crontab,Crypto currency,Wordpress,Ebay,Amazon,Instagram,Mysql,Sqllite,Mongo Db, Soap Api projects.

€244 EUR in 3 days

5.0

(6 reviews)

4.4

@itramsin

Hi, I have 7 years of experience in perl. I can do it as per requirement. can you please provide sample XML input and sample output for the corresponding input? thanks

€250 EUR in 15 days

5.0

(3 reviews)

2.9

@alexannick

Hello, I like solving complicated problems and making the things easier for the other people. In order to achieve this, I have more than 18 years of experience as a IT professional. I have an extraordinary ability and motivation not to give when the situation becomes difficult. On the opposite, I become one with the situation and I find solutions where most of other professionals are holding themselves back. I am interested to see samples of the existing applications to understand the complexity and also what kind of environments the applications will run into. In Credit Suisse, where it was my last project, we had similar requirements and it worked very well because the environment was a controlled one. The methodology that I suggest to work with is agile, which means that we are going to build very fast and low cost prototype which will be available for review and open to suggestions. When there is something specific in hand, the design speeds up and becomes much more efficient because the changes are well defined. Kind Regards Nikolaos

€250 EUR in 3 days

3.1

(2 reviews)

2.6

@NirajAI

Hi, I am a certified python programmer. I will provide you the script file in python which will extract the said information and provide you the excel sheet. Thanks, Niraj

€111 EUR in 3 days